**This season was marked null and void by the Football Association due to Covid-19. However we still recognise the results that clubs managed to achieve in this season.**
| Premier Division | P | W | D | L | F | A | GD | Pts | |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1874 Northwich | 29 | 22 | 5 | 2 | 79 | 27 | 52 | 71 |
| 2 | Warrington Rylands 1906 | 30 | 20 | 3 | 7 | 62 | 32 | 30 | 63 |
| 3 | Bootle | 27 | 19 | 2 | 6 | 66 | 37 | 29 | 59 |
| 4 | Charnock Richard * | 31 | 20 | 2 | 9 | 73 | 50 | 23 | 59 |
| 5 | Ashton Athletic | 29 | 16 | 5 | 8 | 64 | 38 | 26 | 53 |
| 6 | Longridge Town | 26 | 17 | 2 | 7 | 62 | 44 | 18 | 53 |
| 7 | Runcorn Town | 31 | 14 | 9 | 8 | 55 | 41 | 14 | 51 |
| 8 | Irlam | 27 | 13 | 4 | 10 | 50 | 42 | 8 | 43 |
| 9 | Squires Gate | 32 | 13 | 4 | 15 | 56 | 68 | -12 | 43 |
| 10 | Northwich Victoria | 28 | 11 | 7 | 10 | 57 | 43 | 14 | 40 |
| 11 | Whitchurch Alport | 29 | 10 | 8 | 11 | 43 | 44 | -1 | 38 |
| 12 | Avro | 30 | 11 | 4 | 15 | 49 | 55 | -6 | 37 |
| 13 | Winsford United | 29 | 9 | 5 | 15 | 51 | 57 | -6 | 32 |
| 14 | Congleton Town | 30 | 8 | 7 | 15 | 54 | 60 | -6 | 31 |
| 15 | Barnoldswick Town | 27 | 8 | 4 | 15 | 40 | 62 | -22 | 28 |
| 16 | Skelmersdale United | 30 | 7 | 6 | 17 | 48 | 60 | -12 | 27 |
| 17 | Padiham | 28 | 7 | 5 | 16 | 31 | 55 | -24 | 26 |
| 18 | Burscough | 30 | 7 | 5 | 18 | 25 | 67 | -42 | 26 |
| 19 | Litherland REMYCA | 31 | 5 | 7 | 19 | 30 | 77 | -47 | 22 |
| 20 | Hanley Town | 30 | 5 | 6 | 19 | 34 | 70 | -36 | 21 |
| First Division North | P | W | D | L | F | A | GD | Pts | |
|---|---|---|---|---|---|---|---|---|---|
| 1 | Lower Breck | 29 | 21 | 4 | 4 | 95 | 38 | 57 | 67 |
| 2 | AFC Liverpool | 29 | 17 | 6 | 6 | 91 | 43 | 48 | 57 |
| 3 | Shelley | 31 | 17 | 6 | 8 | 67 | 47 | 20 | 57 |
| 4 | Emley | 27 | 17 | 5 | 5 | 68 | 43 | 25 | 56 |
| 5 | Golcar United | 28 | 14 | 4 | 10 | 71 | 49 | 22 | 46 |
| 6 | Ashton Town | 29 | 14 | 4 | 11 | 68 | 54 | 14 | 46 |
| 7 | Prestwich Heys | 29 | 14 | 4 | 11 | 49 | 48 | 1 | 46 |
| 8 | Pilkington | 30 | 14 | 2 | 14 | 62 | 61 | 1 | 44 |
| 9 | AFC Blackpool | 29 | 13 | 2 | 14 | 58 | 60 | -2 | 41 |
| 10 | Holker Old Boys | 30 | 12 | 4 | 14 | 55 | 63 | -8 | 40 |
| 11 | Daisy Hill | 31 | 11 | 5 | 15 | 63 | 86 | -23 | 38 |
| 12 | Chadderton | 29 | 11 | 3 | 15 | 56 | 66 | -10 | 36 |
| 13 | Darwen FC * | 32 | 14 | 4 | 14 | 65 | 74 | -9 | 35 |
| 14 | Nelson | 28 | 10 | 5 | 13 | 47 | 57 | -10 | 35 |
| 15 | Garstang | 29 | 11 | 1 | 17 | 57 | 69 | -12 | 34 |
| 16 | Cleator Moor Celtic | 26 | 8 | 7 | 11 | 52 | 64 | -12 | 31 |
| 17 | Atherton LR | 29 | 8 | 7 | 14 | 36 | 58 | -22 | 31 |
| 18 | Bacup Borough | 27 | 7 | 6 | 14 | 50 | 58 | -8 | 27 |
| 19 | Steeton | 29 | 7 | 5 | 17 | 40 | 75 | -35 | 26 |
| 20 | St Helens Town | 31 | 7 | 4 | 20 | 53 | 90 | -37 | 25 |
| First Division South | P | W | D | L | F | A | GD | Pts | |
|---|---|---|---|---|---|---|---|---|---|
| 1 | Vauxhall Motors | 31 | 27 | 1 | 3 | 83 | 28 | 55 | 82 |
| 2 | FC Oswestry Town | 30 | 21 | 3 | 6 | 68 | 37 | 31 | 66 |
| 3 | Stone Old Alleynians | 30 | 18 | 5 | 7 | 65 | 32 | 33 | 59 |
| 4 | Wythenshawe Town | 27 | 17 | 5 | 5 | 71 | 25 | 46 | 56 |
| 5 | Abbey Hey | 29 | 16 | 5 | 8 | 56 | 44 | 12 | 53 |
| 6 | West Didsbury & Chorlton | 28 | 14 | 5 | 9 | 51 | 34 | 17 | 47 |
| 7 | Eccleshall | 29 | 14 | 3 | 12 | 55 | 47 | 8 | 45 |
| 8 | Cheadle Town | 30 | 13 | 5 | 12 | 50 | 47 | 3 | 44 |
| 9 | Maine Road | 30 | 11 | 5 | 14 | 57 | 54 | 3 | 38 |
| 10 | Stockport Town * | 29 | 13 | 4 | 12 | 57 | 52 | 5 | 37 |
| 11 | Cheadle Heath Nomads | 30 | 10 | 5 | 15 | 44 | 59 | -15 | 35 |
| 12 | Wythenshawe | 26 | 10 | 4 | 12 | 38 | 34 | 4 | 34 |
| 13 | Cammell Laird 1907 | 29 | 9 | 7 | 13 | 56 | 58 | -2 | 34 |
| 14 | New Mills | 28 | 9 | 6 | 13 | 49 | 63 | -14 | 33 |
| 15 | Abbey Hulton United | 31 | 10 | 1 | 20 | 40 | 80 | -40 | 31 |
| 16 | Sandbach United | 26 | 10 | 0 | 16 | 37 | 45 | -8 | 30 |
| 17 | Barnton | 29 | 9 | 1 | 19 | 30 | 59 | -29 | 28 |
| 18 | Ellesmere Rangers | 28 | 7 | 5 | 16 | 37 | 73 | -36 | 26 |
| 19 | Alsager Town | 28 | 6 | 7 | 15 | 31 | 63 | -32 | 25 |
| 20 | St Martins | 30 | 5 | 3 | 22 | 34 | 75 | -41 | 18 |