| Sat 26/07/25 | South Liverpool v Stockport Town | 0-3 | |  | | | | |
| Tue 29/07/25 | Abbey Hey v Stockport Town | 0-3 | | | |  | | |
| Sat 02/08/25 | Chadderton v Stockport Town (CUP) | 2-1 | | | | | | |
| Sat 09/08/25 | Stockport Town v Padiham | 1-2 | | | | | | |
| Mon 11/08/25 | Stockport Town v Prestwich Heys | 1-1 | | | | | | |
| Tue 07/10/25 | Glossop North End v Stockport Town | 1-2 | | | | | | |
| Sat 11/10/25 | Wythenshawe v Stockport Town | 2-1 | | | | | | |
| Mon 13/10/25 | Stockport Town v Hyde United (CUP) * | 4-1 | | | | | | |
| Sat 18/10/25 | Stockport Town v Abbey Hey | 2-2 |  | | | | | |
| Mon 20/10/25 | Stockport Town v City of Liverpool | 0-2 | | | | | | |
| Sat 25/10/25 | FC St Helens v Stockport Town | 1-1 | | | | |  | |
| Mon 03/11/25 | Stockport Town v Burscough | 1-3 | | | | | | |
| Sat 08/11/25 | Stockport Town v Glossop North End | 1-2 | | | | | | |
| Sat 15/11/25 | Stockport Town v Barnoldswick Town | 2-0 | | | | | | |
| Mon 17/11/25 | Stockport Town v Warrington Town (CUP) | 2-0 | | | | | | |
| Sat 22/11/25 | Litherland REMYCA v Stockport Town | 0-6 | | | | | | |
| Sat 29/11/25 | Stockport Town v Longridge Town | 1-2 | | | | | | |
| Wed 03/12/25 | West Didsbury & Chorlton v Stockport Town | 1-3 | | | | | | |
| Sat 06/12/25 | Stockport Town v FC St Helens | 0-4 | | | | | | |
| Fri 12/12/25 | Cheadle Town v Stockport Town | 1-2 | | | | | | |
| Sat 20/12/25 | Stockport Town v Charnock Richard | 0-3 | | | | | | |
| Sat 27/12/25 | FC Isle of Man v Stockport Town | 0-4 | | | | | | |
| Sat 10/01/26 | Stockport Town v Ramsbottom United | 1-1 | | | | | | |
| Tue 20/01/26 | AFC Liverpool v Stockport Town | 4-0 | | | | | | |
| Mon 06/04/26 | Stockport Town v FC Isle of Man * | 3-0 | | | | | | |
