| Tue 29/07/25 | Abbey Hey v Stockport Town * | 0-3 | |  | | | | |
| Sat 30/08/25 | Stockport Town v Euxton Villa * | 1-1 | | | | | | |
| Sat 06/09/25 | Stockport Town v Litherland REMYCA | 1-0 | | | |  | | |
| Wed 10/09/25 | Pilkington v Stockport Town | 1-2 | | | | | | |
| Sat 13/09/25 | Ramsbottom United v Stockport Town | 3-3 | | | | | | |
| Sat 20/09/25 | Stockport Town v Runcorn Town (CUP) * | 0-2 | | | | | | |
| Tue 23/09/25 | Barnoldswick Town v Stockport Town | 3-3 | | | | | | |
| Sat 27/09/25 | Stockport Town v Prestwich Heys (CUP) | 2-3 | | | | | | |
| Sat 04/10/25 | Stockport Town v Irlam | 0-3 | | | | | | |
| Tue 07/10/25 | Glossop North End v Stockport Town | 1-2 | | | | | | |
| Sat 11/10/25 | Wythenshawe v Stockport Town | 2-1 | | | | | | |
| Mon 13/10/25 | Stockport Town v Hyde United (CUP) | 4-1 | | | | | | |
| Sat 18/10/25 | Stockport Town v Abbey Hey * | 2-2 | | | | | | |
| Mon 20/10/25 | Stockport Town v City of Liverpool | 0-2 | | | | | | |
| Sat 25/10/25 | FC St Helens v Stockport Town | 1-1 | | | | | | |
| Tue 20/01/26 | AFC Liverpool v Stockport Town * | 4-0 | | | | | | |
| Sat 24/01/26 | Stockport Town v West Didsbury & Chorlton | 1-0 |  | | | | | |
| Mon 26/01/26 | Stockport Town v Wythenshawe | 2-0 | | | | | | |
| Sat 31/01/26 | Longridge Town v Stockport Town | 1-2 | | | | | | |
| Tue 03/02/26 | Charnock Richard v Stockport Town | 1-2 | | | | | | |
| Sat 07/02/26 | Stockport Town v Pilkington | 4-0 | | | | | | |
| Sat 28/02/26 | Stockport Town v South Liverpool * | 1-1 | | | | | | |
| Tue 03/03/26 | Prestwich Heys v Stockport Town | 1-0 | | | | | | |
| Sat 07/03/26 | Euxton Villa v Stockport Town | 1-4 | | | | | | |
| Tue 10/03/26 | Irlam v Stockport Town | 0-0 | | | | | | |
| Sat 14/03/26 | Burscough v Stockport Town | 0-3 | | | | | | |
